Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KIRP | rs2061846 | chr4:852484 | A/G | 0.000609 | 214 | 18.88 | 11.72 | 5.27 | KM Plot |
| KIRP | rs2065262 | chr21:30243656 | C/T | 0.000397 | 213 | 17 | 15.07 | 1.17 | KM Plot |
| KIRP | rs2065263 | chr21:30243799 | A/C | 0.000397 | 213 | 17 | 15.07 | 1.17 | KM Plot |
| KIRP | rs2065269 | chr21:30245374 | T/C | 0.000397 | 213 | 17 | 15.07 | 1.17 | KM Plot |
| KIRP | rs2068754 | chr10:63433364 | A/C | 0 | 213 | 18 | 7.92 | 3.38 | KM Plot |
| KIRP | rs2072806 | chr6:26385093 | C/G | 2.24E-8 | 209 | 16.45 | 13.38 | 9.77 | KM Plot |
| KIRP | rs2073527 | chr6:26374978 | T/C | 3.08E-7 | 214 | 16.45 | 13.6 | 9.77 | KM Plot |
| KIRP | rs2073529 | chr6:26375159 | C/T | 3.08E-7 | 214 | 9.77 | 13.38 | 16.47 | KM Plot |
| KIRP | rs2073530 | chr6:26375243 | T/C | 3.08E-7 | 214 | 16.45 | 13.6 | 9.77 | KM Plot |
| KIRP | rs2073531 | chr6:26375256 | A/G | 3.08E-7 | 214 | 16.45 | 13.6 | 9.77 | KM Plot |
| KIRP | rs2075641 | chr10:75562108 | G/A | 0 | 213 | 16.45 | 15.07 | 2.47 | KM Plot |
| KIRP | rs2077926 | chr11:34886601 | T/A | 0 | 214 | 15.33 | 17.1 | 1.73 | KM Plot |
| KIRP | rs2079148 | chr16:19855562 | C/T | 2.78E-5 | 213 | 14.83 | 18.12 | 15.58 | KM Plot |
| KIRP | rs2111226 | chr16:47587250 | G/T | 7.93E-8 | 214 | 17.2 | 12.63 | 12.85 | KM Plot |
| KIRP | rs2121313 | chr11:8523042 | T/C | 0.000466 | 214 | 16.43 | 17.2 | 4.82 | KM Plot |